[Python] array() errors if pandas categorical column has dictionary as string not object

Describe the bug, including details regarding any error messages, version, and platform.

pandas 1.5.2
pyarrow 10.0.1

If you convert a pandas Series with dtype string[pyarrow] to category, the categories will be string[pyarrow]. So far, so good.
However, when you try writing the resulting object to parquet, PyArrow fails as it does not recognize its own datatype.

Reproducer

>>> import pandas as pd
>>> df = pd.DataFrame({"x": ["foo", "bar", "foo"], dtype="string[pyarrow]")
>>> df.dtypes.x
string[pyarrow]
>>> df = df.astype("category")
>>> df.dtypes.x
CategoricalDtype(categories=['bar', 'foo'], ordered=False)
>>> df.dtypes.x.categories.dtype
string[pyarrow]
>>> df.to_parquet("foo.parquet")
pyarrow.lib.ArrowInvalid: ("Could not convert <pyarrow.StringScalar: 'bar'> with type pyarrow.lib.StringScalar: did not recognize Python value type when inferring an Arrow data type", 'Conversion failed for column x with type category')

Workaround

df = df.astype(
    {
        k: pd.CategoricalDtype(v.categories.astype(object))
        for k, v in df.dtypes.items()
        if isinstance(v, pd.CategoricalDtype)
        and v.categories.dtype == "string[pyarrow]"
    }
)

Component(s)

Python

@jrbourbeau

FYI @jrbourbeau @ncclementi

@crusaderky

Thank you for reporting @crusaderky!
It seems array() method can't handle categorical pandas columns if the dictionary is string type.

The error is triggered in pandas_compat.py

arrow/python/pyarrow/pandas_compat.py

Lines 591 to 598 in f769f6b

    
           try: 
        
               result = pa.array(col, type=type_, from_pandas=True, safe=safe) 
        
           except (pa.ArrowInvalid, 
        
                   pa.ArrowNotImplementedError, 
        
                   pa.ArrowTypeError) as e: 
        
               e.args += ("Conversion failed for column {!s} with type {!s}" 
        
                          .format(col.name, col.dtype),) 
        
               raise e

due to array() method erroring with ArrowInvalid:

# Works with string series/column
df = pd.DataFrame({"x": ["foo", "bar", "foo"]}, dtype="string[pyarrow]")
pa.array(df["x"])
# <pyarrow.lib.ChunkedArray object at 0x12dcbbef0>
# [
#   [
#     "foo",
#     "bar",
#     "foo"
#   ]
# ]

# Works with categorical with dictionary as object type
df = pd.DataFrame({"x": ["foo", "bar", "foo"]})
df = df.astype("category")
pa.array(df["x"])
# <pyarrow.lib.DictionaryArray object at 0x12dbc5ac0>

# -- dictionary:
#   [
#     "bar",
#     "foo"
#   ]
# -- indices:
#   [
#     1,
#     0,
#     1
#   ]

# Errors if dictionary in categorical column is string
df = pd.DataFrame({"x": ["foo", "bar", "foo"]}, dtype="string[pyarrow]")
df = df.astype("category")
pa.array(df["x"])
# Traceback (most recent call last):
#   File "<stdin>", line 1, in <module>
#   File "pyarrow/array.pxi", line 310, in pyarrow.lib.array
#     return DictionaryArray.from_arrays(
#   File "pyarrow/array.pxi", line 2608, in pyarrow.lib.DictionaryArray.from_arrays
#     _dictionary = array(dictionary, memory_pool=memory_pool)
#   File "pyarrow/array.pxi", line 320, in pyarrow.lib.array
#     result = _sequence_to_array(obj, mask, size, type, pool, c_from_pandas)
#   File "pyarrow/array.pxi", line 39, in pyarrow.lib._sequence_to_array
#     chunked = GetResultValue(
#   File "pyarrow/error.pxi", line 144, in pyarrow.lib.pyarrow_internal_check_status
#     return check_status(status)
#   File "pyarrow/error.pxi", line 100, in pyarrow.lib.check_status
#     raise ArrowInvalid(message)
# pyarrow.lib.ArrowInvalid: Could not convert <pyarrow.StringScalar: 'bar'> with type pyarrow.lib.StringScalar: did not recognize Python value type when inferring an Arrow data type

Debugging from convert_column in dataframe_to_arrays (pandas_compat.py)

df = pd.DataFrame({"x": ["foo", "bar", "foo"]})
df = df.astype("category")
dataframe_to_arrays(df, schema=None, preserve_index=None)
# > /Users/alenkafrim/repos/arrow-new/python/pyarrow/pandas_compat.py(593)convert_column()
# -> result = pa.array(col, type=type_, from_pandas=True, safe=safe)
(Pdb) col
# 0    foo
# 1    bar
# 2    foo
# Name: x, dtype: category
# Categories (2, object): ['bar', 'foo']

df = pd.DataFrame({"x": ["foo", "bar", "foo"]}, dtype="string[pyarrow]")
df = df.astype("category")
dataframe_to_arrays(df, schema=None, preserve_index=None)
# > /Users/alenkafrim/repos/arrow-new/python/pyarrow/pandas_compat.py(593)convert_column()
# -> result = pa.array(col, type=type_, from_pandas=True, safe=safe)
(Pdb) col
# 0    foo
# 1    bar
# 2    foo
# Name: x, dtype: category
# Categories (2, string): [bar, foo]

Inside pa.array(..), we convert a pandas.Categorical by converting its indices and categories to an Array, and then call pa.DictionaryArray.from_array. The first step works:

In [36]: indices = pa.array(df['x'].cat.codes)

In [37]: df["x"].cat.categories.values
Out[37]: 
<ArrowStringArray>
['bar', 'foo']
Length: 2, dtype: string

In [39]: dictionary = pa.array(df["x"].cat.categories.values)

In [40]: dictionary
Out[40]: 
<pyarrow.lib.ChunkedArray object at 0x7f9e87f0e7a0>
[
  [
    "bar",
    "foo"
  ]
]

But the converted categories result in a ChunkedArray, not a plain Array, and then it is DictionaryArray.from_arrays that fails: it expects an Array, and if the passed dictionary is not already an Array, try to convert it to one:

In [43]: pa.DictionaryArray.from_arrays(indices, dictionary)
...
ArrowInvalid: Could not convert <pyarrow.StringScalar: 'bar'> with type pyarrow.lib.StringScalar: did not recognize Python value type when inferring an Arrow data type

In [44]: pa.array(dictionary)
...
ArrowInvalid: Could not convert <pyarrow.StringScalar: 'bar'> with type pyarrow.lib.StringScalar: did not recognize Python value type when inferring an Arrow data type

We should probably ensure that pa.array(..) returns an Array instead of ChunkedArray if there is only one chunk (that is also logic that could live inside pandas' StringArray.__arrow_array__).
I am not sure if our APIs should accept a ChunkedArray (and automatically concatenate the chunks?) in DictionaryArray.from_arrays.

GH-33727: [Python] array() errors if pandas categorical column has di…

apache/arrow#33727 has been fixed in pyarrow via apache/arrow#34289

apacheGH-33727: [Python] array() errors if pandas categorical column …

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[Python] array() errors if pandas categorical column has dictionary as string not object #33727

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	try:
	result = pa.array(col, type=type_, from_pandas=True, safe=safe)
	except (pa.ArrowInvalid,
	pa.ArrowNotImplementedError,
	pa.ArrowTypeError) as e:
	e.args += ("Conversion failed for column {!s} with type {!s}"
	.format(col.name, col.dtype),)
	raise e

[Python] array() errors if pandas categorical column has dictionary as string not object #33727

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Describe the bug, including details regarding any error messages, version, and platform.

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crusaderky commented on Jan 17, 2023

AlenkaF commented on Jan 18, 2023

jorisvandenbossche commented on Jan 18, 2023

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